Question: How To Download All Sra Samples At Once ?

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6.9 years ago by

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Dear Biostars,

As you may know SRA is a repository for all types of sequencing data. I often times have to do manual download by copying links of every SRA dataset by hand and use wget. I am wondering is there any simplest approach than manual copying of links ? Thanx in advance

For ex: How can I download all the data related to SRP026197 ?

ADD COMMENT • link • modified 2.6 years ago by Federico Giorgi • 630 • written 6.9 years ago by biorepine • 1.5k

Have you tried the SRAdb package from bioconductor? It's been a while, but I think it can be used to do that sort of thing.

ADD REPLY • link written 6.9 years ago by Devon Ryan ♦ 98k

Actually, SRA is the repository for sequence data, not GEO. There are links between the two databases, but your question is actually related to SRA.

ADD REPLY • link written 6.9 years ago by Sean Davis ♦ 26k

oh yeah you are right. I will edit my question. thanx 1942 the pacific air war game download.

ADD REPLY • link written 6.9 years ago by biorepine • 1.5k

here is another solution A: How to download raw sequence data from GEO/SRA

ADD REPLY • link written 6.3 years ago by Istvan Albert ♦♦ 86k

when I run the code on my computer,I have a problem below,what is wrong?



trying URL ''Content type 'application/x-gzip' length 1308358823 bytes (1247.7 Mb)opened URLdownloaded 1247.7 Mb


Error in .local(drv, ..) : Could not connect to database:unable to open database file

ADD REPLY • link modified 4.8 years ago • written 4.8 years ago by Ada • 0

Perhaps you ran out of space in /tmp or the equivalent. Anyway, please post things like this as new questions.

ADD REPLY • link modified 4.8 years ago • written 4.8 years ago by Devon Ryan ♦ 98k

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Andrew Werby, USA,
Dennis O. Collier, USA,
Eja Siepman van den Berg, the Netherlands,
Kreysler & Ass., USA (digital sculpture enlargement),
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European Ceramics Work Centre, the Netherlands,
MaatWerkTegels, the Netherlands (tiles),
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Garmin International, Inc, USA,
Hallmark Cards, (Advancing Technologies), USA,
Intel Corporation, USA,
Mettler Toledo, Switzerland
Nefit Buderus, the Netherlands,
Nilfisk, Denmark,
Pentas Moulding, the Netherlands,
Playmobil (Brandstätter GmbH), Germany,
Sony Ericsson Telecommunication, Sweden,
Texas Instruments, the Netherlands,
Unilever, (Advanced Manufacturing Technology Group), the Netherlands,
Toto Enpla, Japan,
Vacu Vin, the Netherlands,
White-Rodgers, USA,


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Art Center College of Design, USA,
Cape Technikon, South Africa
Cardiff Metropolitan University, Great Britain,
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Clemson University, (Lab Advanced Industrial Prototyping), USA,
Delft University of Technology, Dept Industrial Design, the Netherlands,
Dublin Institute of Technology, School of Architecture, Ireland,
Ecole Nationale Superieure des Arts et Metiers, Angers, France,
Ecole Nationale Superieure des Beaux Arts, Paris, France, (see press release)
Escuela Superior de Diseño Industrial, (automotive design), Spain
Fachhochschule Wiesbaden, Germany,
Fontys Hogescholen, the Netherlands,
Gerrit Rietveld Academie, Amsterdam, the Netherlands,
Hogeschool West Vlaanderen, Kortrijk, Belgium,
King Saud University, Riyadh, Saudi Arabia,
Lycée Gustave Flaubert, La Marsa, Tunisia,
MIT, Center for Bits and Atoms, USA,
NTNU, Dept of Product Design Engineering, Norway,
PennState Erie, Behrend College, USA,
Politecnico di Bari, Italy,
Royal College of Art, London, Great Britain,
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Smithsonian Institution, Washington DC, USA,
Technicon Free State, South Africa
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Chupa Chups (Confipack), Spain,
Deltavorm, the Netherlands,
Leaf Holland, the Netherlands,
Robèrt's Chocoladewerken, the Netherlands,

Private Downloadsdrako Student


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Diamond Design Co, USA,
Edelsmederij Turmali, the Netherlands,
Catherine Rudacille, USA,
Gary Swank Jewelers (OR), USA,
Goldschmiede Wittel, Germany,
MWM Jewelers Services, Concord (MA), USA,
Rhudy's Jewelry, USA,


BORGinsole, Belgium (custom insoles)
Coloplast, Denmark, (ostomy care)
Cranial Technologies, USA, (plagiocephaly treatment)
Diapedia, USA, (diabetic foot care)
Klaveness, Norway, (footwear)
Maden, Mexico, (teeth)
Nordic Ortopedica, Sweden (orthopaedic products)
Orthopodolab, the Netherlands, (custom insoles)
Otto Bock, various countries, (mobility aids)
Royal Perth Hospital, Australia,

Model Making

1A100, Italy,
Amalgam Modelmaking Ltd, Great Britain,, Spain,
Crawley Creatures, Great Britain,
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Flex / the workshop, the Netherlands,
Jorge Queipo Prototipos, Spain
HCH Model, Spain,
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PD Models, Great Britain,
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Musical Instruments

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Guitar Mill, USA,
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WAACS Design, the Netherlands,


BIBA, Germany,
Delft University of Technology, Dept Marine Technology, the Netherlands,
Gintic Inst of Mfg Technology, (Rapid Prototyping Development Centre), Singapore
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Vattenfall R&D (hydraulic testing models), Sweden

Scale Models

Anderboat Models, USA (RC submarines)
Busch Models, Germany (cars)
EpokeModeller, Denmark (trains)
Hartvigson Studios, USA (action figures and more)
Into Things, USA (boats)
LaHeli, Czech Republic (RC helicopters)
PST Jets, Thailand (RC airplanes)
RBC Kits, the Netherlands (RC airplanes)
Robbe Modellsport, Austria (various models)
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